Software name

Descreption

www

PrimerSelect

Analyzes a template DNA sequence and chooses primer pairs for PCR and primers for DNA sequencing.

www.dnastar.com

DNASIS Max

DNASIS Max is a fully integrated program that includes a wide range of standard sequence analysis features.

http://www.medprobe.com/no/dnasis.html

Primer Premier 5

primer design for Windows and Power Macintosh.

http://www.premierbiosoft.com/primerdesign/primerdesign.html

Primer Premier:

Comprehensive primer design for Windows and Power Macintosh.

http://www.premierbiosoft.com/

NetPrimer

Comprehensive analysis of individual primers and primer pairs.

http://www.premierbiosoft.com/NetPrimer.html

Array Designer 2

For fast, effective design of specific oligos or PCR primer pairs for microarrays

http://www.premierbiosoft.com/dnamicroarray/dnamicroarray.html

Beacon Designer 2.1

Design molecular beacons and TaqMan probes for robust amplification and fluorescence in real time PCR.

http://www.premierbiosoft.com/molecular_beacons/taqman_molecular_beacons.html

GenomePRIDE 1.0

Primer design for DNA-arrays/chips.

http://pride.molgen.mpg.de/genomepride.html

Fast PCR

Software for Microsoft Windows has specific, ready-to-use templates for many PCR and sequencing applications: standard and long PCR, inverse PCR, degenerate PCR directly on amino acid sequence, multiplex PCR.

http://www.biocenter.helsinki.fi/bi/bare-1_html/manual.htm

OLIGO 6

Primer Analysis Software for Mac and Windows.

http://www.oligo.net/

Primer Designer 4

Will find optimal primers in target regions of DNA or protein molecules, amplify features in a molecule, or create products of a specified length.

http://www.scied.com/ses_pd5.htm

GPRIME

Software for primer design.

http://life.anu.edu.au/molecular/software/gprime.htm

Sarani Gold

Genome Oligo Designer is software for automatic large-scale design of optimal oligonucleotide probes for microarray experiments.

http://mail.strandgenomics.com/products/sarani/

PCR Help

Primer and template design and analysis

http://www.techne.com/CatMol/pcrhelp.htm

Genorama chip Design Software

Genorama Chip Design Software is complete set of programs required for genotyping chip design. The programs can also be bought separately.

http://www.asperbio.com/Chip_desin_soft.htm

Primer Designer

The Primer Designer features a powerful, yet extremely simple, real-time interface to allow the rapid identification of theoretical ideal primers for your PCR reactions.

http://genamics.com/expression/primer.htm

Primer Premier

Automatic design tools for PCR, sequencing or hybridization probes, degenerate primer design, Nested/Multiplex primer design, restriction enzyme analysis and more.

http://www.biotechniques.com/freesamples/itembtn21.html

PrimerDesign

DOS-program to choose primer for PCR or oligonucleotide probes.

http://www.chemie.unimarburg.de/%7Ebecker/pdhome.html