Table 1. Functional annotation of expressed
sequence tags (ESTs) that produced BLASTX hits.
|
BLASTX
annotation |
E-value |
No.
of dbESTs hits |
|
Mitochondrial 26S rRNA (Triticum aestivum, Z11889; Zea
mays, K01868; Beta vulgaris, AP000397; Arabidopsis thaliana,
Y08501)a |
0.0 |
20 |
|
Mitochondrial DNA (Secale cereale, Z14059) |
0.0 |
2 |
|
Mitochondrial 18S rRNA (Zea mays, X00794) |
0.0 |
4 |
|
Mitochondrial 23S rRNA (Beta lupin, X87283) |
4.00E-13 |
1 |
|
Mitochondrial 16S rRNA (Beta japonicum , Z35330) |
0.0 |
2 |
|
SSUb rRNA (Drimys winteri, AF197162; Tetracentron
sinense, AF193998;Grevillea robusta, AF193995; Trochodendron
aralioides, AF161092; Nelumbo nucifera, AF193983; Platanus
occidentalis, AF161090) |
2.00E-87 |
6 |
|
S7 ribosomal fragment (Triticum aestivum, X67242 ) |
1.00E-03* |
1* |
|
S13 ribosomal fragment (Triticum aestivum, Y00520 ) |
0.085* |
1* |
|
Chloroplast DNA (Triticum aestivum, AB042240; Oryza
sativa, AB042240.3; Zea mays, X15901; Hordeum vulgare,
X86563; A. crassa, X86563.2; A. columnaris, X00408; Clinostigma
savoyanum, X00408.1,) |
0.0 |
15 |
|
Long terminal repeat (Hordeum vulgare, Z84569) |
7.00E-03* |
2* |
|
Actin gene (Triticum monococccum, AF326781 ) |
8.00E-31 |
8 |
|
Resistance gene analogue2(Triticum monococccum,
AF326781) |
7.00E-13 |
6 |
|
Retrotransposon, MITEc (Hordeum vulgare,
AB022688) |
3.00E-76 |
5 |
|
Tonoplast DNA (Hordeum vulgare, AF254799) |
6.00E-50 |
3 |
|
HMWd glutenin gene (Aegilops tauschii,
AF497474) |
1.00E-116 |
2 |
|
Noduline-like-protein (Triticum monococcum,
AF326781) |
2.00E-43 |
2 |
|
Chromosome condensation factor (Triticum monococcum,
AF326781) |
2.00E-43 |
2 |
|
mRNA for SSU, Rubisco (Triticum aestivum, K01229; Secale
cereale, M37328; Hordeum vulgare, AJ131738; Triticum
timopheevii, U43493; Triticum urartu, AB020955; Oryza sativa,
AB020954; Avena strigosa, AF052305; Avena maroccana,
AF097360; Aegilops squarrosa, AF104250; Aegilops bicornis,
AB020938; Aegilops sharonensis, AB020936; Aegilops longissima,
AB020935) |
6.00E-58 |
24 |
|
ATP synthase b subunit (Clinostigma savoryanum, AB020933; Elaeis
oleifera, AF449171; Cyphophoenis nucele, AY012452; Howea
belmoreana, AY012445; Phoenix canariensis, AY012435; Linospadix
longicruris, AF209652) |
1.00E-168 |
6 |
|
Aldehyde dehydrogenase (Zea mays, AF449172) |
3.00E-14 |
1 |
|
Microsatellite fragment (Oryza sativa, AF348415) |
3.00E-07* |
2* |
|
Receptor-like kinase (Triticum aestivum, AY021654 ) |
6.00E-07* |
2* |
|
LRRe 19 (Triticum aestivum, AF325196) |
6.00E-65 |
2 |
|
WIR pathogen Rf gene (Triticum
aestivum, AF325196) |
1.00E-125 |
3 |
|
Leucine-rich-like protein (Aegilops tauschii,
X87686) |
1.00E-55 |
2 |
|
RGA link to resistance loci in rice (Oryza sativa,
AB022168) |
4.00E-16 |
1 |
|
actin (ACT-1) gene, partial cds (Triticum monococcum,
AF326781) |
4.00E-16 |
1 |
|
putative chromosome condensation factor (CCF) (Triticum
monococcum, AF326781) |
4.00E-16 |
1 |
|
putative resistance protein(RGA-2) (Triticum monococcum,
AF326781) |
4.00E-16 |
1 |
|
putative nodulin-like protein (NLL) gene (Triticum
monococcum, AF326781) |
6.00E-26 |
1 |
|
chloroplast matK gene for maturase (Cycas pectinata,
AB076238.1; Zamia angustifolia, AB076567.1) |
6.00E-26 |
2 |
|
clone tac 923.8 3' Ac insertion site sequence (Zea mays,
AY065582.1) |
1.00E-29 |
1 |
|
Genomic seq. BAC F27F5 (Arabidopsis thaliana,
AC007915.3) |
0.011* |
1* |
|
Germline Ig heavychain var. region (Macaca mulatta,
U57580) |
0.043* |
1* |
|
Genomic DNAChr. 1 BAC clone: OJ1294_F06 (Oryza sativa,
AP004326.3) |
0.0 |
1 |
|
Wheat chloroplast ATP synthase CF-1 gene, beta and epsilon
subunits, complete cds, and Met-tRNA gene (Triticum aestivum,
M16843) |
7.00E-29 |
1 |
|
Ty1-copia-like retrotransposon partial pol pseudogene,
clone Tbn-1 (Beta nana, AJ489202) |
2.00E-32 |
1 |
|
microsatellite DNA, CA-repeat (AC) (S. salar,
Y11455) |
0.0 |
1 |
|
Predicted membrane protein (Clostridium acetobutylicum,
AE007615-4) |
1.00E-03* |
1* |
|
Nucleotide binding site LRR protein-1 (Oryza sativa,
AY043283) |
4.00E-22 |
1 |
|
Nucleotide-binding leucine-rich-repeat protein 1 (Oryza
sativa, AF271293) |
1.00E-12 |
1 |
|
Nucleotide-binding leucine-rich-repeat protein-like (Oryza
sativa, AP003802) |
4.00E-14 |
2 |
|
Putative NBS-LLR type resistance protein (Oryza sativa,
AC097447) |
3.00E-13 |
1 |
|
Putative disease resistance protein (Oryza sativa,
AC087181) |
1.00E-55 |
|
|
Resistance gene candidate CC-NBS-LLR Class (Arabidopsis
thaliana, NM_175742.1) |
1.00E-33 |
1 |
|
F12M16 (Arabidopsis thaliana, AC008007) |
4.00E-43 |
1 |
|
Disease resistance complex protein NBS-LRR class (Arabidopsis
thaliana, NP_188065.1) |
1.00E-43 |
1 |
|
Putative disease resistance protein CC-NBS Class (Arabidopsis
thaliana, NM_104655) |
1.00E-43 |
1 |
|
PRM1 homolog (Arabidopsis thaliana, AB028231) |
1.00E-43 |
1 |
|
Putative RGA PIC23 -(Lactuca sativa, AF017751) |
3.00E-16 |
1 |
|
Resistance complex protein I2-C-2 (Lycopersicon
peruvianum, AF004879) |
7.00E-13 |
1 |
|
NBS-LRR resistance protein candidate (Lactuca sativa,
AF113949) |
7.00E-13 |
1 |
|
Serine/threonine kinase protein (Triticum aestivum, Pseudoroegneria) |
1.00E-18 |
2 |
|
Conserved hypothetical protein (E. coli, NC_002655,
NC_003047) |
6.00E-31 |
2 |
|
NBS-LRR type protein (r15) gene (Oryza sativa,
AF032702) |
6.00E-13 |
1 |
|
Resistance protein candidate RGC2A pseudogene (Lactuca
sativa, AF072268) |
1.00E-14 |
1 |
|
Polymyxin ß-resistance protein (Saccharomyces,
S569090) |
1.00E-04* |
1* |
|
Receptor like protein (Arabidopsis thaliana,
NP_190339) |
3.00E-13 |
1 |
|
Thioredoxcin (Triticum aestivum, AJ005840) |
1.00E-66 |
1 |
|
18S ribosomal RNA (Triticum aestivum, AY049040) |
0.440* |
1* |
|
Intergrase/recombinase (Brucella melitensis,
AE009541) |
1.00E-03* |
1* |
|
Intergrase-like protein (Bacteriophage H191, AJ236875) |
0.61* |
1* |
|
Microsatellite DNA (Entandrophragma, AJ420885, Cocos,
AJ458311) |
3.00E-48 |
9 |
|
mRNA sequence (Zea mays, AY105736) |
2.00E-287 |
2 |
|
Aminotransferase-like protein (Oryza sativa,
AF105736) |
5.00E-52 |
3 |
|
Genomic DNA chromosome 4 (Oryza sativa, AL662950) |
9.00E-27 |
2 |
|
Giant Cell protein mRNA (Lycopersicon esculentum,
L24012) |
7.00E-03* |
1* |
|
RbcL for Rubisco (Oryza sativa, X62117;Triticum
aestivum, X62119; Aegilops tauschii , X04789; Avena,
L15300) |
9.00E-44 |
9 |
|
Mitochondrial gene for tRNA-His (Oryza sativa,
D13101) |
2.00E-35 |
1 |
a.
NCBI
accession number of homologous sequence
b.
Small
subunit
c.
Miniature
inverted terminal repeat element
d.
High
molecular weight
e.
Leucine
rich-repeat
f.
Resistance
*
Protein with discernable function